PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10008383
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NF-YB
Protein Properties Length: 102aa    MW: 11452.8 Da    PI: 5.755
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10008383genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB132.31.5e-411821797
        NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseas.dkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97
                 mk++lP nakisk+aket+q+cvsefisfvtseas +kc++e+rkt+ngdd++wa+++lGf+dy+ pl+ +l++yre+eg++
  Lus10008383  1 MKQILPPNAKISKEAKETMQDCVSEFISFVTSEASeEKCRKERRKTLNGDDICWAMGSLGFDDYALPLRRFLQRYREVEGDS 82
                 9*********************************9459*****************************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.3E-37191IPR009072Histone-fold
PfamPF008087.8E-20156IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.29E-28192IPR009072Histone-fold
PRINTSPR006155.2E-161937No hitNo description
PRINTSPR006155.2E-163957No hitNo description
PRINTSPR006155.2E-165876No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MKQILPPNAK ISKEAKETMQ DCVSEFISFV TSEASEEKCR KERRKTLNGD DICWAMGSLG  60
FDDYALPLRR FLQRYREVEG DSRSATGNFD DTAGAPHPQH P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B8e-321771792Transcription factor HapC (Eurofung)
4g92_B8e-321771792Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012084241.13e-49PREDICTED: nuclear transcription factor Y subunit B-4-like
SwissprotO822483e-41NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A067JYD03e-49A0A067JYD0_JATCU; Uncharacterized protein
STRINGPOPTR_0008s22520.11e-46(Populus trichocarpa)
STRINGGLYMA07G37840.21e-46(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.12e-42nuclear factor Y, subunit B5